I also don't like the new breeding system, not because it's unbalanced, too hard or something (there are obviously a few problems like the genderless pokemon breeding), but because trading two pokemons to get an egg is not logical and is lorebreaking, it doesn't feel like I'm playing Pokemon. I understand what the devs goals were for implementing this and they accomplished them, but breeding pokemon isn't, or at least shouldn't be treated as the same as mixing materials together to create a weapon or something in other MMOs.
tl;dr: OP isn't the only one