So I've been messing around in the battle.xml in themes and using the code under the line:
<!-- Theme used by various battle windows including the main window, skill learn dialog and item selection dialog -->
<theme name="battle-panel" ref="-defaults" allowWildcard="true">
<param name="background"><image>none</image></param>
<param name="border"><border>7</border></param> <- setting this to another number changes where the battle command UI is on screen
but for the life of me Im not sure how it works because instead of just moving the UI up and down it shifts it to the right and down.
I would like to move the battle commands so they are OFF the actual battle area, preferable centered just below.
The best I could do is set that number to 207 which results it being slight off center and too low.
The code comments leave a little something to be desired when trying to mess with the files....